PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00032.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 498aa    MW: 54900.9 Da    PI: 8.6117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00032.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0592114123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k F r  nL+ H r H
  Rsa1.0_00032.1_g00002.1  92 FVCEICNKGFQRDQNLQLHRRGH 114
                              89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-591114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.42E-691114No hitNo description
PROSITE profilePS5015710.94992114IPR007087Zinc finger, C2H2
SMARTSM003550.01792114IPR015880Zinc finger, C2H2-like
PfamPF121717.9E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM00355240134164IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.42E-6164189No hitNo description
SMARTSM00355180169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MMSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHQQE QQQFFVPEPQ  60
PQKKKRSQPG NPDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL  120
KQRSNKEVTR KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDCKAHSKT CGTKEYRCDC GTLFSRRDSY ITHRAFCVAL AEETAREVVI PQNQNHQPNP  240
LMIHQSSSHH HHQAQPNMNI SSHNINSLHF EINNTGTNNN NSSSNHLHAF SMKKEQQQTS  300
DQIINYHHHG VPPWLAPQPQ HLTSSNPNPS NGGGGGGGGL FSLAASPAMS ATALLQKAAQ  360
TGSTKTTPLP PTTDFERSHN TLATTMAAMM TSPSGFISSN NSNQVLFQDY NASGFNHHHG  420
GQEAFDDTFN GFLRTDTSTA GSDKNKSGGG SGGGEGLTRD FLGIRPLMSQ NEILSFAGLG  480
NCINDVASDQ LHPKPWQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118131KLKQRSNKEVTRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407162.10.0hypothetical protein EUTSA_v10020544mg
RefseqXP_006407163.10.0hypothetical protein EUTSA_v10020544mg
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLV4LDU40.0V4LDU4_EUTSA; Uncharacterized protein
STRINGBra027394.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11